API for ImpulseDE2
Differential expression analysis of longitudinal count data sets

Global functions
$,ImpulseDE2Object-method Man page
ImpulseDE2 Man page
ImpulseDE2Object-class Man page
[[,ImpulseDE2Object,character,missing-method Man page
append_strReport Man page Source code
computeNormConst Man page Source code
computeSizeFactors Man page Source code
estimateImpulseParam Man page Source code
estimateSigmoidParam Man page Source code
evalImpulse Man page Source code
evalImpulse_comp Man page
evalLogLikImpulse Man page Source code
evalLogLikImpulse_comp Man page
evalLogLikMu Man page Source code
evalLogLikMu_comp Man page
evalLogLikSigmoid Man page Source code
evalLogLikSigmoid_comp Man page
evalSigmoid Man page Source code
evalSigmoid_comp Man page
fitConstImpulse Man page Source code
fitConstImpulseGene Man page Source code
fitConstModel Man page Source code
fitImpulseModel Man page Source code
fitModels Man page Source code
fitSigmoidGene Man page Source code
fitSigmoidModel Man page Source code
fitSigmoidModels Man page Source code
get_accessors Man page
get_boolCaseCtrl Man page Man page Source code
get_dfAnnotationProc Man page Man page Source code
get_lsModelFits Man page Source code
get_matCountDataProc Man page Man page Source code
get_scaNProc Man page Man page Source code
get_scaQThres Man page Man page Source code
get_strReport Man page Man page Source code
get_vecAllIDs Man page Source code
get_vecConfounders Man page Man page Source code
get_vecDispersions Man page Man page Source code
get_vecSizeFactors Man page Man page Source code
list_accession Man page Man page Man page Man page
names,ImpulseDE2Object-method Man page
names.ImpulseDE2Object Man page
plotGenes Man page Source code
plotHeatmap Man page Source code
processData Man page Source code
runDEAnalysis Man page Source code
runDESeq2 Man page Source code
runImpulseDE2 Man page Source code
set_accessors Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page
set_boolCaseCtrl Man page Man page Source code
set_dfAnnotationProc Man page Man page Source code
set_dfImpulseDE2Results Man page Man page Source code
set_lsModelFits Man page Man page Source code
set_matCountDataProc Man page Man page Source code
set_scaNProc Man page Man page Source code
set_scaQThres Man page Man page Source code
set_strReport Man page Man page Source code
set_vecAllIDs Man page Man page Source code
set_vecConfounders Man page Man page Source code
set_vecDEGenes Man page Man page Source code
set_vecDispersions Man page Man page Source code
set_vecSizeFactors Man page Man page Source code
simulateDataSetImpulseDE2 Man page Source code
updateDEAnalysis Man page Source code
wrapper Man page
writeReportToFile Man page Source code
ImpulseDE2 documentation built on Nov. 1, 2018, 4:02 a.m.