get_accessors: ImpulseDE2Object "get" accession functions
In ImpulseDE2: Differential expression analysis of longitudinal count data sets

Description Usage Arguments Value Author(s) Examples

Get internal data of ImpulseDE2 output object.

get_lsModelFits(obj)

get_matCountDataProc(obj)

get_dfAnnotationProc(obj)

get_vecAllIDs(obj)

get_vecSizeFactors(obj)

get_vecDispersions(obj)

get_boolCaseCtrl(obj)

get_vecConfounders(obj)

get_scaNProc(obj)

get_scaQThres(obj)

get_strReport(obj)

obj

(ImpulseDE2Object) A ImpulseDE2 output object.

The internal data object specified by the function.

David Sebastian Fischer

   
lsSimulatedData <- simulateDataSetImpulseDE2(
vecTimePointsA   = rep(seq(1,8),3),
vecTimePointsB   = NULL,
vecBatchesA      = NULL,
vecBatchesB      = NULL,
scaNConst        = 30,
scaNImp          = 10,
scaNLin          = 10,
scaNSig          = 10)
objectImpulseDE2 <- runImpulseDE2(
matCountData    = lsSimulatedData$matObservedCounts, 
dfAnnotation    = lsSimulatedData$dfAnnotation,
boolCaseCtrl    = FALSE,
vecConfounders  = NULL,
scaNProc        = 1 )
# Extract hidden auxillary result and processed input objects.
lsModelFits <- get_lsModelFits(objectImpulseDE2)
matCountDataProc <- get_matCountDataProc(objectImpulseDE2)
dfAnnotationProc <- get_dfAnnotationProc(objectImpulseDE2)
vecAllIDs <- get_vecAllIDs(objectImpulseDE2)
vecSizeFactors <- get_vecSizeFactors(objectImpulseDE2)
vecDispersions <- get_vecDispersions(objectImpulseDE2)
boolCaseCtrl <- get_boolCaseCtrl(objectImpulseDE2)
vecConfounders <- get_vecConfounders(objectImpulseDE2)
scaNProc <- get_scaNProc(objectImpulseDE2)
scaQThres <- get_scaQThres(objectImpulseDE2)
strReport <- get_strReport(objectImpulseDE2)