API for IntEREst
Intron-Exon Retention Estimator
| Global functions | |
|---|---|
| DEXSeqIntEREst | Man page Source code |
| IntEREst | Man page |
| IntEREst-package | Man page |
| InterestResult | Man page Source code |
| addAnnotation | Man page Source code |
| annotateU12 | Man page Source code |
| applyOverlap | Man page Source code |
| attributes | Man page |
| bamIterPair | Source code |
| bamIterSingle | Source code |
| boxplot,SummarizedExperiment-method | Man page |
| boxplot-method | Man page |
| buildSsTypePwms | Man page Source code |
| correctLen | Source code |
| correctLengthRepeat | Source code |
| counts,SummarizedExperiment-method | Man page |
| counts-method | Man page |
| counts.InterestResults | Man page Source code |
| deseqInterest | Man page Source code |
| exactTestInterest | Man page Source code |
| getAnnotation | Man page Source code |
| getRepeatTable | Man page Source code |
| getRowData | Source code |
| glmInterest | Man page Source code |
| interest | Man page Source code |
| interest.sequential | Man page Source code |
| interestAnalyse | Source code |
| interestAnalyse.sequential | Source code |
| interestIntExAnalysePair | Source code |
| interestIntExAnalyseSingle | Source code |
| interestResultIntEx | Man page Source code |
| interestSummarise | Source code |
| intexBoxplot | Man page Source code |
| intexIndex | Man page Source code |
| lfc | Man page Source code |
| matchPwmToReference | Source code |
| mdsChr22ExObj | Man page |
| mdsChr22IntSpObj | Man page |
| mdsChr22Obj | Man page |
| mergeInterestResult | Man page Source code |
| plot,SummarizedExperiment,ANY-method | Man page |
| plot-method | Man page |
| plot.InterestResult | Man page Source code |
| psi | Man page Source code |
| pwmU12db | Man page |
| qlfInterest | Man page Source code |
| readInterestResults | Man page Source code |
| referencePrepare | Man page Source code |
| scaledRetention | Man page Source code |
| subInterestResult | Man page Source code |
| treatInterest | Man page Source code |
| u12 | Man page |
| u12Boxplot | Man page Source code |
| u12BoxplotNb | Man page Source code |
| u12DensityPlot | Man page Source code |
| u12DensityPlotIntron | Man page Source code |
| u12Index | Man page Source code |
| u12NbIndex | Man page Source code |
| unionRefTr | Man page Source code |
| updateRowDataCol | Man page Source code |
