intexIndex: Extract index of intron or exon rows

In IntEREst: Intron-Exon Retention Estimator

Description

Extract row numbers where introns (or exons dependant on user's request) are located in an object of type SummarizedExperiment.

Usage

intexIndex(x, intExCol="int_ex", what="intron")

Arguments

x	Object of type SummarizedExperiment.
intExCol	Column name (or number) that represents whether each row is "intron" or "exon" in rowData of x.
what	A character string that defines whether the index for the introns or exons should be returned. Accepts either "exon" or "intron" (default) as values.

Value

A numeric vector which includes the index of the introns/exons.

Author(s)

Ali Oghabian

See Also

u12NbIndex

Examples

# Show the few first index of rows that represent the introns
head(intexIndex(mdsChr22Obj, what="intron"))

IntEREst documentation built on Nov. 8, 2020, 8:05 p.m.