Files in IntEREst
Intron-Exon Retention Estimator

DESCRIPTION
NAMESPACE
inst/CITATION
inst/NEWS.Rd
inst/scripts/selectCh22fromBam.sh
inst/scripts/download-sra.sh
inst/scripts/sraFilesURL.txt
inst/scripts/u12Regions.bed
inst/scripts/sraTofastqConvert.sh
inst/scripts/make_small_test.sh
inst/scripts/build_mdsChr22Obj.R
inst/scripts/allTophat2Runs.sh
inst/scripts/readme.txt
inst/doc/IntEREst.html
inst/doc/IntEREst.R inst/doc/IntEREst.Rmd
inst/fig/collapseExons.png
inst/fig/IntEREst.png
inst/extdata/small_test_SRR1691637_ZRSR2Mut_RHBDD3.bam
inst/extdata/small_test_SRR1691637_ZRSR2Mut_RHBDD3.bam.bai
vignettes/ref.bib
vignettes/IntEREst.Rmd R/bamIterPair.R R/readInterestResults.R R/qlfInterest.R R/mergeInterestResult.R R/glmInterest.R R/interest.sequential.R R/u12DensityPlot.R R/u12NbIndex.R R/unionRefTr.R R/interestResultIntEx.R R/updateRowDataCol.R R/bamIterSingle.R R/exactTestInterest.R R/u12Boxplot.R R/referencePrepare.R R/lfc.R R/interestAnalyse.sequential.R R/buildSsTypePwms.R R/interest.R R/getRepeatTable.R R/annotateU12.R R/DEXSeqInterest.R R/u12BoxplotNb.R R/interestIntExAnalyze.R R/deseqInterest.R R/psi.R R/intexIndex.R R/subInterestResult.R R/classes.R R/interestSummarise.R R/treatInterest.R R/u12DensityPlotIntron.R R/matchPwmToReference.R R/interestAnalyse.R R/u12Index.R man/counts-method.Rd man/interestResult.Rd man/mdsChr22Obj.Rd man/glmInterest.Rd man/unionRefTr.Rd man/updateRowDataCol.Rd man/u12BoxplotNb.Rd man/interestResultIntEx.Rd man/u12NbIndex.Rd man/annotateU12.Rd man/intexIndex.Rd man/psi.Rd man/DEXSeqIntEREst.Rd man/mdsChr22ExObj.Rd man/addAnnotation.Rd man/lfc.Rd man/qlfInterest.Rd man/interest.Rd man/buildSsTypePwms.Rd man/exactTestInterest.Rd man/u12Index.Rd man/deseqInterest.Rd man/plot-method.Rd man/readInterestResults.Rd man/getRepeatTable.Rd man/u12Boxplot.Rd man/IntEREst-package.Rd man/treatInterest.Rd man/u12DensityPlot.Rd man/referencePrepare.Rd man/mdsChr22IntSpObj.Rd man/u12.Rd man/attributes.Rd man/mergeInterestResult.Rd man/interest.sequential.Rd man/boxplot-method.Rd man/subInterestResult.Rd man/pwmU12db.Rd
build/vignette.rds
data/mdsChr22IntSpObj.rda
data/mdsChr22ExObj.rda
data/u12.rda
data/pwmU12db.rda
data/mdsChr22Obj.rda
IntEREst documentation built on Nov. 1, 2018, 4:26 a.m.