u12Index: Extract index of U12 introns rows

In IntEREst: Intron-Exon Retention Estimator

Description

Extract row numbers of U12 introns in an object of class SummarizedExperiment.

Usage

u12Index(x, intExCol="int_ex", intTypeCol="int_type", intronExon="intron")

Arguments

x	Object of type SummarizedExperiment.
intExCol	Column name (or number) that represents whether each row of x assays is "intron" or "exon".
intTypeCol	Column name (or number) that represents what type of intron each row of x assays represents.
intronExon	Whether extract U12 type introns (set intronExon="intron") or exon-exon junction (set intronExon="exon") flanking U12 introns.

Value

A numeric vector which includes the index of U12 introns.

Author(s)

Ali Oghabian

See Also

u12NbIndex

Examples

head(u12Index(mdsChr22Obj, intTypeCol="intron_type"))

IntEREst documentation built on Nov. 8, 2020, 8:05 p.m.