API for LOLA
Locus overlap analysis for enrichment of genomic ranges

Global functions
LOLA Man page
LOLA-package Man page
buildRestrictedUniverse Man page Source code
checkUniverseAppropriateness Man page Source code
cleanws Man page Source code
countFileLines Source code
countOverlapsAny Source code
countOverlapsAnyRev Man page Source code
countOverlapsRev Source code
dtToGr Source code
dtToGrInternal Source code
enforceEdgeCharacter Source code
enforceTrailingSlash Source code
extractEnrichmentOverlaps Man page Source code
getRegionFile Man page Source code
getRegionSet Man page Source code
lapplyAlias Man page Source code
listRegionSets Man page Source code
listToGRangesList Man page Source code
loadRegionDB Man page Source code
mergeRegionDBs Man page Source code
nlist Man page Source code
plotTopLOLAEnrichments Man page Source code
readBed Man page Source code
readCollection Man page Source code
readCollectionAnnotation Man page Source code
readCollectionFiles Man page Source code
readRegionGRL Man page Source code
readRegionSetAnnotation Man page Source code
redefineUserSets Man page Source code
replaceFileExtension Man page Source code
runLOLA Man page Source code
sampleGRL Man page Source code
setLapplyAlias Man page Source code
setSharedDataDir Man page Source code
splitDataTable Man page Source code
splitFileIntoCollection Man page Source code
userSets Man page
userUniverse Man page
write.tsv Man page Source code
writeCombinedEnrichment Man page Source code
writeDataTableSplitByColumn Man page Source code
LOLA documentation built on Nov. 17, 2017, 8:44 a.m.