userSets: An example set of regions, sampled from the example database.

In LOLA: Locus overlap analysis for enrichment of genomic ranges

Description

A dataset containing a few sample regions.

Usage

data(sample_input)

Format

A GRangesList object

Value

No return value.

Examples

## Not run: 
This is how I produced the sample data sets:
dbPath = system.file("extdata", "hg19", package="LOLA")
regionDB = loadRegionDB(dbLocation= dbPath)
userSetA = reduce(do.call(c, (sampleGRL(regionDB$regionGRL,
prop=c(.1,.25,.05,.05,0)))))
userSetB = reduce(do.call(c, (sampleGRL(regionDB$regionGRL,
prop=c(.2,.05,.05,.05,0)))))

userSets = GRangesList(setA=userSetA, setB=userSetB)
userUniverse = reduce(do.call(c, regionDB$regionGRL))
save(userSets, file="sample_input.RData")
save(userUniverse, file="sample_universe.RData")

## End(Not run)

LOLA documentation built on Nov. 8, 2020, 8:23 p.m.