Files in LOLA

Locus overlap analysis for enrichment of genomic ranges

README.md R/calcLocEnrichment.R R/splitFileIntoCollection.R R/utility.R R/LOLA.R R/loadRegionDB.R R/postEnrichment.R R/data.R R/examples/example.R R/examples/example2.R vignettes/choosingUniverse.Rmd vignettes/gettingStarted.Rmd vignettes/usingLOLACore.Rmd man/write.tsv.Rd man/LOLA.Rd man/plotTopLOLAEnrichments.Rd man/splitDataTable.Rd man/countOverlapsAnyRev.Rd man/readCollectionFiles.Rd man/userUniverse.Rd man/buildRestrictedUniverse.Rd man/splitFileIntoCollection.Rd man/nlist.Rd man/readCollection.Rd man/getRegionFile.Rd man/extractEnrichmentOverlaps.Rd man/readCollectionAnnotation.Rd man/sampleGRL.Rd man/mergeRegionDBs.Rd man/setSharedDataDir.Rd man/cleanws.Rd man/loadRegionDB.Rd man/userSets.Rd man/listToGRangesList.Rd man/getRegionSet.Rd man/replaceFileExtension.Rd man/checkUniverseAppropriateness.Rd man/writeCombinedEnrichment.Rd man/runLOLA.Rd man/redefineUserSets.Rd man/readRegionGRL.Rd man/readBed.Rd man/listRegionSets.Rd man/lapplyAlias.Rd man/setLapplyAlias.Rd man/writeDataTableSplitByColumn.Rd man/readRegionSetAnnotation.Rd tests/testthat.R tests/testthat/test_all.R inst/doc/gettingStarted.R inst/doc/choosingUniverse.R inst/doc/usingLOLACore.R inst/doc/choosingUniverse.Rmd inst/doc/gettingStarted.Rmd inst/doc/usingLOLACore.Rmd inst/web/README.md