DistStatis-GlobalPlot: Global-Plot

In LinkHD: LinkHD: a versatile framework to explore and integrate heterogeneous data

Description

this function outputs a plot from a DistStatis object. The plot shows the projection of the all common observation onto each subspace used at the integration step

Usage

## S4 method for signature 'DistStatis'
GlobalPlot(x)

Arguments

x	DistStatis class object.

Value

plotted GlobalPlot/s of the component/s of the given DistStatis object.

Author(s)

Laura M. Zingaretti

Examples

{

data(Taraoceans)
pro.phylo <- Taraoceans$taxonomy[ ,'Phylum']
TaraOc<-list(Taraoceans$phychem,as.data.frame(Taraoceans$pro.phylo),
as.data.frame(Taraoceans$pro.NOGs))
TaraOc_1<-scale(TaraOc[[1]])
Normalization<-lapply(list(TaraOc[[2]],TaraOc[[3]]),
function(x){DataProcessing(x,Method='Compositional')})
colnames(Normalization[[1]])=pro.phylo
colnames(Normalization[[2]])=Taraoceans$GO
TaraOc<-list(TaraOc_1,Normalization[[1]],Normalization[[2]])
names(TaraOc)<-c('phychem','pro_phylo','pro_NOGs')
TaraOc<-lapply(TaraOc,as.data.frame)
Output<-LinkData(TaraOc,Scale =FALSE,
Distance = c('ScalarProduct','Euclidean','Euclidean'))
GlobalPlot(Output) +
theme(panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
panel.background = element_blank(),
axis.line = element_line(colour = 'black'))


}

LinkHD documentation built on Nov. 8, 2020, 5:08 p.m.