Liquid Associaiton Package

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Description

The LiquidAssociation package provide methods to examine a special kind of three-way interaction called liquid association. The term liquid association was first proposed by contains functions for calculate direct and model-based estimators for liquid associaiton. It also provides functions for testing the existence of liquid associaiton given a gene triplet data.

Details

Package: LiquidAssociation
Type: Package
Version: 1.0.4
Date: 2009-10-05
License: GPL version 2 or newer
LazyLoad: yes

GLA LA CNM.full CNM.simple getsGLA getsLA plotGLA

Author(s)

Yen-Yi Ho <yho@jhsph.edu>

Maintainer: Yen-Yi Ho <yho@jhsph.edu>

References

Ker-Chau Li, Genome-wide coexpression dynamics: theory and application (2002). PNAS 99 (26): 16875-16880.

Yen-Yi Ho, Leslie Cope, Thomas A. Louis, and Giovanni Parmigiani, GENERALIZED LIQUID ASSOCIATION (April 2009). Johns Hopkins University, Dept. of Biostatistics Working Papers. Working Paper 183. http://www.bepress.com/jhubiostat/paper183

Examples

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data<-matrix(rnorm(300), ncol=3)

colnames(data)<-c("Gene1", "Gene2", "Gene3")

FitCNM.full<-CNM.full(data)

FitCNM.full