Logolas
EDLogo Plots Featuring String Logos and Adaptive Scaling of Position-Weight Matrices

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Logolas: EDLogo Plots Featuring String Logos and Adaptive Scaling of Position-Weight Matrices

Logolas: EDLogo Plots Featuring String Logos and Adaptive Scaling of Position-Weight Matrices

Produces logo plots highlighting both enrichment and depletion of characters, allows for plotting of string symbols, and performs scaling of position-weights adaptively, along with several fun stylizations.

Getting started

README.md Guided Logolas Tutorial

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Vignettes Man pages API and functions Files

Package details
AuthorKushal Dey [aut, cre], Dongyue Xie [aut], Peter Carbonetto [ctb], Matthew Stephens [aut]
Bioconductor views Alignment Bayesian SequenceMatching Software Visualization
MaintainerKushal Dey <kkdey@uchicago.edu>
LicenseGPL (>= 2)
Version1.11.0
URL https://github.com/kkdey/Logolas 
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R: 
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Logolas")

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Logolas documentation built on April 28, 2020, 8:55 p.m.

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