API for MADSEQ
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data

Global functions
HDIofMCMC Source code
MADSEQ-package Man page
MadSeq Man page
MadSeq-class Man page
aneuploidy_chr18 Man page
calculateGC Source code
calculateNormedCoverage Source code
calculateSubCoverage Source code
calculate_BIC Source code
correctGCBias Source code
coverageQuantile Source code
creatDataList_Four Source code
creatDataList_LOH Source code
creatDataList_One Source code
creatDataList_Two Source code
deltaBIC Man page
deltaBIC,MadSeq-method Man page
filter_hetero Source code
getCoverage Source code
isHetero Source code
log_likelihood_UPD Source code
log_likelihood_four Source code
log_likelihood_one Source code
log_likelihood_two Source code
normalizeCoverage Man page Source code
plotFraction Man page
plotFraction,MadSeq-method Man page
plotMadSeq Man page
plotMadSeq,MadSeq-method Man page
plotMixture Man page
plotMixture,MadSeq-method Man page
plotSites Source code
posterior Man page
posterior,MadSeq-method Man page
prepareCoverageGC Man page Source code
prepareHetero Man page Source code
removeAQP Source code
removeGap Source code
removeHLA Source code
removeRE Source code
runLOH Source code
runMadSeq Man page Source code
runMeioticTrisomy Source code
runMitoticTrisomy Source code
runMonosomy Source code
runNormal Source code
summary Man page
summary,MadSeq-method Man page
MADSEQ documentation built on Nov. 1, 2018, 2:58 a.m.