Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data

Global functions | |
---|---|

HDIofMCMC | Source code |

MADSEQ-package | Man page |

MadSeq | Man page |

MadSeq-class | Man page |

aneuploidy_chr18 | Man page |

calculateGC | Source code |

calculateNormedCoverage | Source code |

calculateSubCoverage | Source code |

calculate_BIC | Source code |

correctGCBias | Source code |

coverageQuantile | Source code |

creatDataList_Four | Source code |

creatDataList_LOH | Source code |

creatDataList_One | Source code |

creatDataList_Two | Source code |

deltaBIC | Man page |

deltaBIC,MadSeq-method | Man page |

filter_hetero | Source code |

getCoverage | Source code |

isHetero | Source code |

log_likelihood_UPD | Source code |

log_likelihood_four | Source code |

log_likelihood_one | Source code |

log_likelihood_two | Source code |

normalizeCoverage | Man page Source code |

plotFraction | Man page |

plotFraction,MadSeq-method | Man page |

plotMadSeq | Man page |

plotMadSeq,MadSeq-method | Man page |

plotMixture | Man page |

plotMixture,MadSeq-method | Man page |

plotSites | Source code |

posterior | Man page |

posterior,MadSeq-method | Man page |

prepareCoverageGC | Man page Source code |

prepareHetero | Man page Source code |

removeAQP | Source code |

removeGap | Source code |

removeHLA | Source code |

removeRE | Source code |

runLOH | Source code |

runMadSeq | Man page Source code |

runMeioticTrisomy | Source code |

runMitoticTrisomy | Source code |

runMonosomy | Source code |

runNormal | Source code |

summary | Man page |

summary,MadSeq-method | Man page |

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