Files in MADSEQ

Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

data/aneuploidy_chr18.RData

R/PreProcessingHelper.R R/MADSEQ.R R/PlotShow.R R/RunModelShow.R R/AllGenerics.R R/PreProcessingShow.R R/RunModelHelper.R R/PlotHelper.R R/AllClasses.R R/MadSeqMethod.R R/data.R vignettes/MADSEQ-vignette.Rmd man/plotMadSeq.Rd man/aneuploidy_chr18.Rd man/runMadSeq.Rd man/posterior.Rd man/plotFraction.Rd man/deltaBIC.Rd man/plotMixture.Rd man/summary-method.Rd man/normalizeCoverage.Rd man/prepareHetero.Rd man/prepareCoverageGC.Rd man/MADSEQ-package.Rd man/MadSeq.Rd

inst/NEWS

inst/doc/MADSEQ-vignette.Rmd

inst/doc/MADSEQ-vignette.html

inst/doc/MADSEQ-vignette.R

inst/gap/hg19_gap_gr.RDS

inst/gap/hg38_gap_gr.RDS

inst/gap/hs37d5_gap_gr.RDS

inst/rjags/OneMix.txt

inst/rjags/FourMix.txt

inst/rjags/TwoMixTrisomy.txt

inst/rjags/TwoMixMonosomy.txt

inst/rjags/LOH.txt

inst/extdata/aneuploidy.bam.bai

inst/extdata/target.bed

inst/extdata/aneuploidy.vcf1.gz

inst/extdata/aneuploidy.vcf.gz

inst/extdata/normal.bam.bai

inst/extdata/aneuploidy.bam

inst/extdata/normal.vcf.gz

inst/extdata/aneuploidy.vcf.gz.tbi

inst/extdata/normal.bam

inst/HLA/hs37d5_HLA_gr.RDS

inst/HLA/hg38_HLA_gr.RDS

inst/HLA/hg19_HLA_gr.RDS

inst/AQP7/hs37d5_AQP7_gr.RDS

inst/AQP7/hg19_AQP7_gr.RDS

inst/AQP7/hg38_AQP7_gr.RDS

MADSEQ documentation built on Nov. 8, 2020, 6:51 p.m.