Files in MADSEQ
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data
README.md
MADSEQ documentation built on Nov. 8, 2020, 6:51 p.m.
NAMESPACE
DESCRIPTION
build/vignette.rds
data/aneuploidy_chr18.RData
R/PreProcessingHelper.R
R/MADSEQ.R
R/PlotShow.R
R/RunModelShow.R
R/AllGenerics.R
R/PreProcessingShow.R
R/RunModelHelper.R
R/PlotHelper.R
R/AllClasses.R
R/MadSeqMethod.R
R/data.R
vignettes/MADSEQ-vignette.Rmd
man/plotMadSeq.Rd
man/aneuploidy_chr18.Rd
man/runMadSeq.Rd
man/posterior.Rd
man/plotFraction.Rd
man/deltaBIC.Rd
man/plotMixture.Rd
man/summary-method.Rd
man/normalizeCoverage.Rd
man/prepareHetero.Rd
man/prepareCoverageGC.Rd
man/MADSEQ-package.Rd
man/MadSeq.Rd
inst/NEWS
inst/doc/MADSEQ-vignette.Rmd
inst/doc/MADSEQ-vignette.html
inst/doc/MADSEQ-vignette.R
inst/gap/hg19_gap_gr.RDS
inst/gap/hg38_gap_gr.RDS
inst/gap/hs37d5_gap_gr.RDS
inst/rjags/OneMix.txt
inst/rjags/FourMix.txt
inst/rjags/TwoMixTrisomy.txt
inst/rjags/TwoMixMonosomy.txt
inst/rjags/LOH.txt
inst/extdata/aneuploidy.bam.bai
inst/extdata/target.bed
inst/extdata/aneuploidy.vcf1.gz
inst/extdata/aneuploidy.vcf.gz
inst/extdata/normal.bam.bai
inst/extdata/aneuploidy.bam
inst/extdata/normal.vcf.gz
inst/extdata/aneuploidy.vcf.gz.tbi
inst/extdata/normal.bam
inst/HLA/hs37d5_HLA_gr.RDS
inst/HLA/hg38_HLA_gr.RDS
inst/HLA/hg19_HLA_gr.RDS
inst/AQP7/hs37d5_AQP7_gr.RDS
inst/AQP7/hg19_AQP7_gr.RDS
inst/AQP7/hg38_AQP7_gr.RDS
