Files in MAIT
Statistical Analysis of Metabolomic Data
NAMESPACE
DESCRIPTION
build/vignette.rds
data/MAIT_sample.RData
data/MAITtables.RData
R/featureSigID.R
R/classNum.R
R/peakAggregation.R
R/metaboliteTable.R
R/sampleProcessing.R
R/classifRatioClasses.R
R/pcaModel.R
R/selectPLScomp.R
R/pcaLoadings.R
R/spectralSigFeatures.R
R/featureInfo.R
R/Biotransformations.R
R/show-methods.R
R/getScoresTable.R
R/LSDResults.R
R/featureID.R
R/plsScores.R
R/AllGenerics.R
R/spectralFUN.R
R/peakAnnotation.R
R/plsModel.R
R/ovClassifRatioData.R
R/parameters.R
R/method.R
R/classes.R
R/selectK.R
R/SearchCand.R
R/spectralWelch.R
R/PLSDA.R
R/writeExcelTable.R
R/writeParameterTable.R
R/plsLoadings.R
R/scores-methods.R
R/computeSpectra.R
R/removeOnePeakSpectra.R
R/pcaScores.R
R/plotHeatmap.R
R/plotBoxplot.R
R/resultsPath.R
R/ovClassifRatioTable.R
R/FisherLSD.R
R/identifyMetabolites.R
R/spectralTStudent.R
R/model-methods.R
R/spectralAnova.R
R/summary-methods.R
R/AllClasses.R
R/plotPCA.R
R/getPeaklist-methods.R
R/pvalues.R
R/MAITbuilder.R
R/Validation.R
R/project.R
R/rawData.R
R/sigPeaksTable.R
R/models.R
R/loadings-methods.R
R/pvaluesCorrection.R
R/plotPLS.R
R/spectralWilcox.R
R/successRatio.R
R/spectralKruskal.R
vignettes/MAIT_workflow.pdf
vignettes/MAIT_objectAnn.RData
vignettes/framed.sty
vignettes/sampleTree.png
vignettes/MAIT_Vignette.Rnw
man/models.Rd
man/Validation.Rd
man/Biotransformations.Rd
man/plsLoadings.Rd
man/MAIT.PhenoData-class.Rd
man/MAIT.Parameters-class.Rd
man/metaboliteTable.Rd
man/featureID.Rd
man/MAIT.FeatureData-class.Rd
man/inBetween.Rd
man/scores.Rd
man/resultsPath.Rd
man/pcaLoadings.Rd
man/successRatio.Rd
man/spectralWilcox.Rd
man/posAdducts.Rd
man/MAIT.RawData-class.Rd
man/plsModel.Rd
man/selectK.Rd
man/plotHeatmap.Rd
man/model.Rd
man/project.Rd
man/plotPCA.Rd
man/MAIT.Validation-class.Rd
man/selectPLScomp.Rd
man/spectralWelch.Rd
man/SearchCand.Rd
man/plotPLS.Rd
man/FisherLSD.Rd
man/identifyMetabolites.Rd
man/rawData.Rd
man/negAdducts.Rd
man/plsScores.Rd
man/MAIT_dataSet.Rd
man/pvalues.Rd
man/ovClassifRatio.Rd
man/loadings.Rd
man/method.Rd
man/featureSigID.Rd
man/classes.Rd
man/featureInfo.Rd
man/pcaModel.Rd
man/spectralTStudent.Rd
man/classifRatioClasses.Rd
man/MAIT.FeatureInfo-class.Rd
man/writeParameterTable.Rd
man/MAIT-class.Rd
man/biotransformationsTable.Rd
man/MAITbuilder.Rd
man/spectralSigFeatures.Rd
man/PCAplot3d.Rd
man/writeExcelTable.Rd
man/LSDResults.Rd
man/retrieveSpectrum.Rd
man/annotateBiotransf.Rd
man/sigPeaksTable.Rd
man/spectralAnova.Rd
man/peakAggregation.Rd
man/PLSDA.Rd
man/getScoresTable.Rd
man/pvaluesCorrection.Rd
man/removeOnePeakSpectra.Rd
man/pcaScores.Rd
man/parameters.Rd
man/plotBoxplot.Rd
man/peakAnnotation.Rd
man/sampleProcessing.Rd
man/Database.Rd
man/spectralFUN.Rd
man/classNum.Rd
man/spectralKruskal.Rd
man/ovClassifRatioTable.Rd
inst/NEWS
inst/CITATION
inst/doc/MAIT_Vignette.pdf
inst/doc/MAIT_Vignette.Rnw
inst/doc/MAIT_Vignette.R
