R/writeParameterTable.R

In MAIT: Statistical Analysis of Metabolomic Data

##
##
## All code copyright (c) 2013 UPC/UB
## All accompanying written materials copyright (c) 2013 UPC/UB
##
##
##   This program is free software: you can redistribute it and/or modify
##    it under the terms of the GNU General Public License as published by
##    the Free Software Foundation, either version 3 of the License, or
##    (at your option) any later version.
##
##    This program is distributed in the hope that it will be useful,
##    but WITHOUT ANY WARRANTY; without even the implied warranty of
##    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
##    GNU General Public License for more details.
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##    You should have received a copy of the GNU General Public License
##    along with this program.  If not, see <http://www.gnu.org/licenses/>.
##


writeParameterTable <- function(listParameters,folder){

outputTable <- as.matrix(c(unlist(listParameters@sampleProcessing),unlist(listParameters@peakAnnotation),unlist(listParameters@peakAggregation),unlist(listParameters@sigFeatures),unlist(listParameters@biotransformations),unlist(listParameters@identifyMetabolites),unlist(listParameters@classification),unlist(listParameters@plotPCA),unlist(listParameters@plotHeatmap)))
colnames(outputTable) <- c("Value")

write.csv(file=paste(folder,"MAITparameters.csv",sep="/"),outputTable)
return(outputTable)
}