API for MEDIPS
DNA IP-seq data analysis
| Global functions | |
|---|---|
| COUPLINGset | Man page |
| COUPLINGset-class | Man page |
| MEDIPS | Man page |
| MEDIPS-package | Man page |
| MEDIPS.Bam2GRanges | Man page |
| MEDIPS.Bed2Granges | Man page |
| MEDIPS.CpGenrich | Man page Source code |
| MEDIPS.GenomicCoordinates | Man page Source code |
| MEDIPS.addCNV | Man page Source code |
| MEDIPS.calibrationCurve | Man page Source code |
| MEDIPS.cnv | Man page Source code |
| MEDIPS.correlation | Man page Source code |
| MEDIPS.couplingVector | Man page Source code |
| MEDIPS.createROIset | Man page Source code |
| MEDIPS.createSet | Man page |
| MEDIPS.diffMeth | Man page Source code |
| MEDIPS.exportWIG | Man page Source code |
| MEDIPS.getAnnotation | Man page Source code |
| MEDIPS.getPositions | Man page Source code |
| MEDIPS.mergeFrames | Man page Source code |
| MEDIPS.mergeSets | Man page Source code |
| MEDIPS.meth | Man page Source code |
| MEDIPS.plotCalibrationPlot | Man page Source code |
| MEDIPS.plotSaturation | Man page Source code |
| MEDIPS.plotSeqCoverage | Man page Source code |
| MEDIPS.rms | Man page Source code |
| MEDIPS.saturation | Man page Source code |
| MEDIPS.selectROIs | Man page Source code |
| MEDIPS.selectSig | Man page Source code |
| MEDIPS.seqCoverage | Man page Source code |
| MEDIPS.setAnnotation | Man page Source code |
| MEDIPSroiSet | Man page |
| MEDIPSroiSet-class | Man page |
| MEDIPSset | Man page |
| MEDIPSset-class | Man page |
| ROI,MEDIPSroiSet-method | Man page |
| adjustReads | Man page Source code |
| bin.ROIs | Man page Source code |
| bin_number | Man page |
| bin_number,MEDIPSroiSet-method | Man page |
| bin_size | Man page |
| bin_size,MEDIPSset-method | Man page |
| chr_lengths | Man page |
| chr_lengths,COUPLINGset-method | Man page |
| chr_lengths,MEDIPSroiSet-method | Man page |
| chr_lengths,MEDIPSset-method | Man page |
| chr_names | Man page |
| chr_names,COUPLINGset-method | Man page |
| chr_names,MEDIPSroiSet-method | Man page |
| chr_names,MEDIPSset-method | Man page |
| extend | Man page |
| extend,MEDIPSroiSet-method | Man page |
| extend,MEDIPSset-method | Man page |
| genome_CF | Man page |
| genome_CF,COUPLINGset-method | Man page |
| genome_count | Man page |
| genome_count,MEDIPSroiSet-method | Man page |
| genome_count,MEDIPSset-method | Man page |
| genome_name | Man page |
| genome_name,COUPLINGset-method | Man page |
| genome_name,MEDIPSroiSet-method | Man page |
| genome_name,MEDIPSset-method | Man page |
| getGRange | Man page |
| getMObjectFromWIG | Man page Source code |
| getPairedGRange | Man page |
| getTypes | Man page Source code |
| matDiff | Man page Source code |
| matMax | Man page Source code |
| matMean | Man page Source code |
| matMin | Man page Source code |
| matNnotNA | Man page Source code |
| matSd | Man page Source code |
| matTtest | Man page Source code |
| number_pattern | Man page |
| number_pattern,COUPLINGset-method | Man page |
| number_regions | Man page |
| number_regions,MEDIPSroiSet-method | Man page |
| number_regions,MEDIPSset-method | Man page |
| path_name | Man page |
| path_name,MEDIPSroiSet-method | Man page |
| path_name,MEDIPSset-method | Man page |
| readRegionsFile | Man page |
| rois | Man page Man page |
| rois,MEDIPSroiSet-method | Man page |
| sample_name | Man page |
| sample_name,MEDIPSroiSet-method | Man page |
| sample_name,MEDIPSset-method | Man page |
| scanBamToGRanges | Man page Source code |
| seq_pattern | Man page |
| seq_pattern,COUPLINGset-method | Man page |
| setTypes | Man page Source code |
| shifted | Man page |
| shifted,MEDIPSroiSet-method | Man page |
| shifted,MEDIPSset-method | Man page |
| show | Man page |
| show,COUPLINGset-method | Man page |
| show,MEDIPSroiSet-method | Man page |
| show,MEDIPSset-method | Man page |
| uniq | Man page |
| uniq,MEDIPSroiSet-method | Man page |
| uniq,MEDIPSset-method | Man page |
| window_size | Man page |
| window_size,COUPLINGset-method | Man page |
| window_size,MEDIPSset-method | Man page |
