MEDIPS.plotSaturation: Function plots the results of the MEDIPS.saturationAnalysis...

Description Usage Arguments Value Author(s) Examples

View source: R/MEDIPS.plotSaturation.R

Description

The results of the saturation analysis will be visualized by the function.

Usage

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MEDIPS.plotSaturation(saturationObj = NULL, main="Saturation analysis")

Arguments

saturationObj

The saturation results object returned by the MEDIPS.saturationAnalysis function

main

The title of the coverage plot.

Value

The coverage plot will be visualized.

Author(s)

Lukas Chavez

Examples

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library(MEDIPSData)
library(BSgenome.Hsapiens.UCSC.hg19)
bam.file.hESCs.Rep1.MeDIP = system.file("extdata", "hESCs.MeDIP.Rep1.chr22.bam", package="MEDIPSData")

sr=MEDIPS.saturation(file=bam.file.hESCs.Rep1.MeDIP, BSgenome="BSgenome.Hsapiens.UCSC.hg19", uniq=1e-3, extend=250, shift=0, window_size=100, chr.select="chr22", nit=10, nrit=1, empty_bins=TRUE, rank=FALSE)
MEDIPS.plotSaturation(saturationObj = sr, main="Saturation analysis")

MEDIPS documentation built on May 2, 2018, 4:17 a.m.