MEDIPS.correlation: Calculates pairwise Pearson correlations between provided...
In MEDIPS: DNA IP-seq data analysis

The function calculates genome wide Pearson correlations between all pairs of provided MEDIPS SETs.

1	MEDIPS.correlation(MSets=NULL, plot = T, method="spearman")

`MSets`	a concatenated set of MEDIPS SETs
`plot`	if specified, the correlation will be depicted as a scatter plot
`method`	default: spearman; alternatives: kendall, spearman

a correlation matrix

Lukas Chavez

library(MEDIPSData)
data(hESCs_MeDIP)
data(DE_MeDIP)

correlation = MEDIPS.correlation(MSets=c(hESCs_MeDIP[[1]], DE_MeDIP[[1]]), plot = FALSE)

MEDIPS documentation built on Nov. 8, 2020, 5:05 p.m.

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