MEDIPS-package: (MeD)IP-seq data analysis

Description Details Author(s) References

Description

MEDIPS was developed for analyzing data derived from methylated DNA immunoprecipitation (MeDIP) experiments followed by sequencing (MeDIP-seq). Nevertheless, several functionalities may be applied to other types of sequencing data (e.g. differential coverage or testing the saturation of ChIP-seq data). MEDIPS addresses several aspects in the context of MeDIP-seq data analysis including basic data processing, several quality controls, normalization, and identification of differential coverage.

Details

Package: MEDIPS
Type: Package
License: GPL (>=2)
LazyLoad: yes

Author(s)

Lukas Chavez, Matthias Lienhard, Joern Dietrich

Maintainer: Lukas Chavez <[email protected]>

References

Chavez L, Jozefczuk J, Grimm C, Dietrich J, Timmermann B, Lehrach H, Herwig R, Adjaye J., Computational analysis of genome-wide DNA methylation during the differentiation of human embryonic stem cells along the endodermal lineage, Genome Res. 2010 Oct;20(10):1441-50. Epub 2010 Aug 27.


MEDIPS documentation built on May 2, 2018, 4:17 a.m.