plotProfile: Generate a plot of a feature's profile for one or two omics.
In MOSim: Multi-Omics Simulation (MOSim)

Description Usage Arguments Value Examples

Generate a plot of a feature's profile for one or two omics.

1 2	plotProfile(simulation, omics, featureIDS, drawReps = FALSE, groups = NULL)

`simulation`	A MOSimulation object
`omics`	Character vector of the omics to simulate.
`featureIDS`	List containing the feature to show per omic. Must have the omics as the list names and the features as values.
`drawReps`	Logical to enable/disable the representation of the replicates inside the plot.
`groups`	Character vector indicating the groups to plot in the form "GroupX" (i.e. Group1)

A ggplot2 object.

omic_list <- c("RNA-seq", "miRNA-seq")
rnaseq_simulation <- mosim(omics = omic_list)

plotProfile(rnaseq_simulation,
    omics = c("RNA-seq", "miRNA-seq"),
    featureIDS = list("RNA-seq"="ENSMUSG00000007682", "miRNA-seq"="mmu-miR-320-3p")
)