Global functions | |
---|---|
$,MSnID-method | Man page |
$,MSnIDFilter-method | Man page |
$<-,MSnID-method | Man page |
$<-,MSnIDFilter-method | Man page |
.add_mod_symbol | Source code |
.assess_missed_cleavages | Source code |
.assess_termini | Source code |
.check_column | Source code |
.construct_optimization_grid | Source code |
.convert_MSnID_to_MSnSet | Source code |
.get_clean_peptide_sequence | Source code |
.get_filterString | Source code |
.get_filterValues | Source code |
.get_num_pep_for_fdr | Source code |
.id_quality | Source code |
.is_filterList_valid | Source code |
.map_mod_sites | Source code |
.optimize_filter | Source code |
.optimize_filter.grid | Source code |
.optimize_filter.grid.mclapply | Source code |
.optimize_filter.grid.parLapply | Source code |
.read_mzIDs.memoized | Source code |
.read_mzIDs.mzR | Source code |
.read_mzIDs.mzR.engine.single.file | Source code |
.remap_accessions | Source code |
.strip_flanking_AAs | Source code |
.strip_modifications_from_peptide | Source code |
MSnID | Man page Source code |
MSnID-class | Man page |
MSnID-package | Man page |
MSnIDFilter | Man page Source code |
MSnIDFilter-class | Man page |
[[,MSnID,ANY,ANY-method | Man page |
[[,MSnID-method | Man page |
[[<-,MSnID,ANY,ANY,ANY-method | Man page |
accessions | Man page |
accessions,MSnID-method | Man page |
add_mod_symbol | Man page |
add_mod_symbol,MSnID-method | Man page |
apply_filter | Man page |
apply_filter,MSnID,MSnIDFilter-method | Man page |
apply_filter,MSnID,character-method | Man page |
as.numeric,MSnIDFilter-method | Man page |
assess_missed_cleavages | Man page |
assess_missed_cleavages,MSnID-method | Man page |
assess_termini | Man page |
assess_termini,MSnID-method | Man page |
c_elegans | Man page |
class:MSnID | Man page |
class:MSnIDFilter | Man page |
coerce,MSnID,MSnSet-method | Man page |
coerce,MSnID,data.table-method | Man page |
correct_peak_selection | Man page |
correct_peak_selection,MSnID-method | Man page |
dim,MSnID-method | Man page |
evaluate_filter | Man page |
evaluate_filter,MSnID-method | Man page |
factor_to_str_converter | Source code |
fetch_conversion_table | Man page Source code |
id_quality | Man page |
id_quality,MSnID-method | Man page |
infer_parsimonious_accessions | Man page |
infer_parsimonious_accessions,MSnID-method | Man page |
length,MSnIDFilter-method | Man page |
map_mod_sites | Man page |
map_mod_sites,MSnID-method | Man page |
mass_measurement_error | Man page |
mass_measurement_error,MSnID-method | Man page |
msnidObj | Man page |
names,MSnID-method | Man page |
names,MSnIDFilter-method | Man page |
optimize_filter | Man page |
optimize_filter,MSnIDFilter,MSnID-method | Man page |
peptides | Man page |
peptides,MSnID-method | Man page |
proteins | Man page |
proteins,MSnID-method | Man page |
psms | Man page |
psms,MSnID-method | Man page |
psms<- | Man page |
psms<-,MSnID,data.frame-method | Man page |
read_mzIDs | Man page |
read_mzIDs,MSnID-method | Man page |
rec_insert | Source code |
recalibrate | Man page |
recalibrate,MSnID-method | Man page |
remap_accessions | Man page |
remap_accessions,MSnID-method | Man page |
remap_fasta_entry_names | Man page Source code |
report_mods | Man page |
report_mods,MSnID-method | Man page |
show,MSnID-method | Man page |
show,MSnIDFilter-method | Man page |
update,MSnIDFilter-method | Man page |
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