report_mods: Lists modification masses in the MSnID object

Description Usage Arguments Value Author(s) See Also Examples

Description

Parses out masses from the modification column and return them as table with counts.

Usage

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    report_mods(object, ...)

Arguments

object

An instance of class "MSnID".

...

currently not used

Value

Counts of each modification mass listed in modification column.

Author(s)

Vladislav A Petyuk vladislav.petyuk@pnnl.gov

See Also

add_mod_symbol map_mod_sites

Examples

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msnidObj <- MSnID(".")
mzids <- system.file("extdata","phospho.mzid.gz",package="MSnID")
msnidObj <- read_mzIDs(msnidObj, mzids)
# reports the masses and number of their occurences
report_mods(msnidObj)
# clean-up cache
unlink(".Rcache", recursive=TRUE)

MSnID documentation built on Nov. 8, 2020, 8:03 p.m.