accessions: Non-redundant list of accession (protein) identifiers

In MSnID: Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications

Description

Returns the non-redundant list of accession (protein) identifiers from the MSnID object. Most of the times accessions and proteins have the same meaning. However, there are cases, for example use of 6-frame stop-to-stop translation as FASTA file, where the entries are called with general term accessions rather then proteins. Currently, accessions and proteins have the same meaning in MSnID.

Usage

    accessions(object, ...)
    proteins(object, ...)

Arguments

object	An instance of class "MSnID".
...	ignored parameters

Value

Non-redundant list of accession (protein) identifiers.

Author(s)

Vladislav A Petyuk [e-mail]

See Also

peptides

Examples

data(c_elegans)
head(accessions(msnidObj))
head(proteins(msnidObj))

MSnID documentation built on Nov. 8, 2020, 8:03 p.m.