Files in MSnID
Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications
TODO
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/c_elegans.RData
R/remap_fasta_entry_names.R
R/map_mod_sites.R
R/AllGenerics.R
R/read_mzIDs.R
R/fetch_conversion_table.R
R/MSnID-methods.R
R/optimize_filter.r
R/remap_accessions-method.R
R/AllClasses.R
R/add_mod_symbol.R
R/MSnIDFilter-methods.R
demo/00Index
demo/c_elegans.R
vignettes/msnid.bib
vignettes/msnid_vignette.Rnw
vignettes/handling_mods.Rnw
man/report_mods.Rd
man/apply_filter.Rd
man/fetch_conversion_table.Rd
man/MSnIDFilter-class.Rd
man/accessions.Rd
man/infer_parsimonious_accessions.Rd
man/optimize_filter.Rd
man/mass_measurement_error.Rd
man/evaluate_filter.Rd
man/recalibrate.Rd
man/remap_accessions-method.Rd
man/assess_termini.Rd
man/MSnID-package.Rd
man/data.Rd
man/psms.Rd
man/peptides.Rd
man/read_mzIDs.Rd
man/id_quality.Rd
man/remap_fasta_entry_names.Rd
man/add_mod_symbol.Rd
man/MSnID-class.Rd
man/map_mod_sites.Rd
man/correct_peak_selection.Rd
man/assess_missed_cleavages.Rd
tests/runTests.R
inst/doc/handling_mods.pdf
inst/doc/msnid_vignette.Rnw
inst/doc/msnid_vignette.R
inst/doc/handling_mods.R
inst/doc/handling_mods.Rnw
inst/doc/msnid_vignette.pdf
inst/extdata/for_phospho.fasta.gz
inst/extdata/c_elegans.mzid.gz
inst/extdata/phospho.mzid.gz
inst/extdata/human_brain.txt
inst/unitTests/test_data_load.R
inst/unitTests/test_apply_filter.R
inst/unitTests/test_optimize_filter.R
inst/unitTests/test_irreg_cleavages.R
inst/unitTests/test_missed_cleavages.R
inst/unitTests/test_infer_parsimonious_accessions.R
