Man pages for MassArray
Analytical Tools for MassArray Data
| ampliconPrediction | Amplicon prediction |
| analyzeCpGs | Analyze CG methylation |
| bisConvert | Bisulphite conversion |
| calcMeth | Calculate percent methylation |
| calcMW | Calculate molecular weight |
| calcPercentAdduct | Calculate percent salt adducts |
| calcPercentConversion | Calculate percent conversion |
| combine | Combine MassArrayData objects |
| combine-methods | Combine MassArrayData objects (methods) |
| convControl | Conversion control |
| countCGs | Count number of CGs |
| createWiggle | Create wiggle track |
| estimatePrimerDimer | Estimate Primer Dimers |
| evaluateSNPs | Evaluate SNPs |
| expandSequence | Expand nucleotide sequence |
| findCollisions | Find peak collisions |
| findFragments | Find fragments |
| findPeaks | Find peaks |
| identifySNPs | Identify SNPs |
| importEpiTyperData | Import EpiTyper data (v.1.0) |
| importEpiTyperData.new | Import EpiTyper data (v.1.0.5) |
| inSilicoFragmentation | In silico fragmentation |
| isAssayable | Is assayable? |
| MassArrayData-class | Class "MassArrayData" |
| MassArray.example.data | MassArray Data object |
| MassArrayFragment-class | Class "MassArrayFragment" |
| MassArrayPeak-class | Class "MassArrayPeak" |
| MassArraySpectrum-class | Class "MassArraySpectrum" |
| numCollisions | Count peak collisions |
| plot.MassArrayData | Plot MassArrayData |
| position | Operate on positional information |
| position-methods | Operate on positional information (methods) |
| revComplement | Reverse complement |
| revComplement-methods | Reverse complement (methods) |
| rnaDigest | RNA digest |
| samples | Operate on sample name(s) |
| samples-methods | Operate on sample name(s) (methods) |
| sum.MassArraySpectrum | Sum MassArraySpectrum objects |
