MassArraySpectrum-class: Class "MassArraySpectrum"

In MassArray: Analytical Tools for MassArray Data

Description

A data structure containing MassArray spectral data for a single sample

Objects from the Class

Objects can be created by calls of the form new("MassArraySpectrum", sample, rxn, strand, peaks, quality.conversion, quality.spectra, quality.primerdimer, quality.contaminant, quality.adducts, ...).

Slots

sample:

Sample name

rxn:

Cleavage reaction (either 'T' or 'C')

strand:

DNA strand for amplicon (either '+' or '-')

peaks:

List containing objects of class MassArrayPeak

quality.conversion:

Overall level(s) of remnant unconverted cytosines, as measured by one or more conversion controls

quality.spectra:

(currently not supported)

quality.primerdimer:

(currently not supported)

quality.contaminant:

(currently not supported)

quality.adducts:

Overall ratio(s) of Na and/or K adduct peak heights to expected peak heights

Methods

\$

signature(x = "MassArraySpectrum"): ...

\$<-

signature(x = "MassArraySpectrum"): ...

initialize

signature(.Object = "MassArraySpectrum"): ...

Author(s)

Reid F. Thompson ([e-mail]), John M. Greally ([e-mail])

See Also

See Also MassArrayData

Examples

showClass("MassArraySpectrum")

MassArray documentation built on Nov. 8, 2020, 5:16 p.m.