countCGs: Count number of CGs
In MassArray: Analytical Tools for MassArray Data
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Function to count the number of CG dinucleotides in a given sequence (can include special characters for degenerate bases - i.e. 'Y' or 'R')
Usage
1
Arguments
sequence
Nucleotide sequence input as a character string
Value
Returns a numerical count of the number of CG dinucleotides in a given sequence, NA if sequence input is NA
Author(s)
Reid F. Thompson (rthompso@aecom.yu.edu), John M. Greally (jgreally@aecom.yu.edu)
Examples
1
countCGs("AAACGCGAAAAAAAYGAAA")
MassArray documentation built on Nov. 8, 2020, 5:16 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Function to count the number of CG dinucleotides in a given sequence (can include special characters for degenerate bases - i.e. 'Y' or 'R')
Usage
1 |
Arguments
sequence |
Nucleotide sequence input as a character string |
Value
Returns a numerical count of the number of CG dinucleotides in a given sequence, NA if sequence input is NA
Author(s)
Reid F. Thompson (rthompso@aecom.yu.edu), John M. Greally (jgreally@aecom.yu.edu)
Examples
1 | countCGs("AAACGCGAAAAAAAYGAAA")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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