Man pages for Melissa
Bayesian clustering and imputationa of single cell methylomes
| binarise_files | Binarise CpG sites |
| cluster_ari | Compute clustering ARI |
| cluster_error | Compute clustering assignment error 'cluster_error' computes... |
| create_melissa_data_obj | Create methylation regions for all cells |
| eval_cluster_performance | Evaluate clustering performance |
| eval_imputation_performance | Evaluate imputation performance |
| extract_y | Extract responses y |
| filter_regions | Filtering process prior to running Melissa |
| impute_met_files | Impute/predict methylation files |
| impute_test_met | Impute/predict test methylation states |
| init_design_matrix | Initialise design matrices |
| log_sum_exp | Compute stable log-sum-exp |
| Melissa | 'Melissa': Bayesian clustering and imputation of single cell... |
| melissa_encode_dt | Synthetic ENCODE single cell methylation data |
| melissa_gibbs | Gibbs sampling algorithm for Melissa model |
| melissa_synth_dt | Synthetic single cell methylation data |
| melissa_vb | Cluster and impute single cell methylomes using VB |
| partition_dataset | Partition synthetic dataset to training and test set |
| plot_melissa_profiles | Plot predictive methylaation profiles |
