melissa_encode_dt: Synthetic ENCODE single cell methylation data
In Melissa: Bayesian clustering and imputationa of single cell methylomes

Description Usage Format Value See Also

Small synthetic ENCODE data generated by inferring methylation profiles from bulk ENCODE data, and subsequently generating single cells. It consists of N = 200 cells and M = 100 genomic regions. The data are in the required format for directly running Melissa and are used as a case study for the vignette.

1	melissa_encode_dt

A list object containing methylation regions, annotation data and the options used for creating the data. This in general would be the output of the create_melissa_data_obj function. It has the following three objects:

met: A list containing the methylation data, each element of the list is a different cell.
anno_region: Corresponding annotation data for each genomic region.
opts: Parameters/options used to generate the data.

Synthetic ENCODE methylation data

create_melissa_data_obj

Melissa documentation built on Nov. 8, 2020, 5:37 p.m.