typeMatch_link0: Get typeMatch and link0 data frame

In MetCirc: Navigating mass spectral similarity in high-resolution MS/MS metabolomics data

Description

'typeMatch_link0' returns a list with accessors '"link0df"' and '"type_match"'

Usage

typeMatch_link0(similarityMatrix, spectra, type, condition)

Arguments

similarityMatrix	'matrix' with pair-wise similarity values
spectra	'MSpectra' object
type	'character', either '"mz"', '"retentionTime"', '"clustering"'
condition	'character', tissue

Details

Helper function for 'shinyCircos'.

Value

'list' of length 2, entry 'link0df' is of 'data.frame' and entry 'type_match' that is a 'character' vector

Author(s)

Thomas Naake, [e-mail]

Examples

data("spectra", package = "MetCirc")
similarityMat <- compare_Spectra(spectra_tissue[1:10], 
    fun = normalizeddotproduct, binSize = 0.01)
## order according to retention time 
MetCirc:::typeMatch_link0(similarityMatrix = similarityMat, 
    spectra = spectra_tissue, type = "mz", 
    condition = c("SPL", "LIM", "ANT", "STY"))

MetCirc documentation built on Nov. 8, 2020, 8:26 p.m.