Fetch homozygous genotypes of inbred mouse strains

In MouseFM: In-silico methods for genetic finemapping in inbred mice

knitr::opts_chunk$set(
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Introduction

This R package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Method fetch allows to download homozygous genotypes of 37 inbred mouse strains for a given genetic region.

Installation

if(!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MouseFM")

Loading package

library(MouseFM)

Example function calls

Fetch genotypes for region chr1:5000000-6000000.

df = fetch("chr1", start=5000000, end=6000000)

df[1:10,]

View meta information

comment(df)

Output of Session Info

The output of sessionInfo() on the system on which this document was compiled:

sessionInfo()

MouseFM documentation built on Nov. 8, 2020, 7:26 p.m.