vis_reduction_factors: Visualize

In MouseFM: In-silico methods for genetic finemapping in inbred mice

Description

Visualize reduction factors

Usage

vis_reduction_factors(geno, red, n_top)

Arguments

geno	Genotype data frame or GenomicRanges::GRanges object.
red	Reduction factor data frame.
n_top	Number if combinations to be returned.

Value

Data frame

Examples

l = prio(c("chr1", "chr2"),
  start = c(5000000, 5000000),
  end = c(6000000, 6000000), strain1 = c("C3H_HeH"), strain2 = "AKR_J"
)

plots = vis_reduction_factors(l$genotypes, l$reduction, 2)

plots[[1]]
plots[[2]]

MouseFM documentation built on Nov. 8, 2020, 7:26 p.m.