count_mbs_contexts: Count MBS variants grouped by length.
In MutationalPatterns: Comprehensive genome-wide analysis of mutational processes

Description Usage Arguments Details Value See Also Examples

Count MBS variants grouped by length.

1	count_mbs_contexts(vcf_list)

vcf_list

GRanges or GRangesList object containing mbs variants.

Counts the number of mbs grouped by length from a GRanges or GRangesList object containing mbs variants. This is used, since a COSMIC context has to our knowledge not yet been defined. This function applies the count_mbs_contexts_gr function to each gr in its input. It then combines the results in a single tibble and returns this.

A tibble containing the number of MBS per MBS length per gr.

Other MBS: plot_compare_mbs(), plot_mbs_contexts()

## Get a GRangesList or GRanges object with mbs variants.
mbs_grl <- readRDS(system.file("states/blood_grl_mbs.rds",
  package = "MutationalPatterns"
))

# Count the MBSs
count_mbs_contexts(mbs_grl)