mutations_from_vcf: Retrieve base substitutions from vcf

Description Usage Arguments Value See Also Examples

View source: R/mutations_from_vcf.R

Description

A function to extract base substitutions of each position in vcf

Usage

1

Arguments

vcf

A CollapsedVCF object

Value

Character vector with base substitutions

See Also

read_vcfs_as_granges

Examples

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## See the 'read_vcfs_as_granges()' example for how we obtained the
## following data:
vcfs <- readRDS(system.file("states/read_vcfs_as_granges_output.rds",
                package="MutationalPatterns"))

muts = mutations_from_vcf(vcfs[[1]])

MutationalPatterns documentation built on May 31, 2017, 3:34 p.m.