mutations_from_vcf: Retrieve base substitutions from vcf
In MutationalPatterns: Comprehensive genome-wide analysis of mutational processes
Description
Usage
Arguments
Value
See Also
Examples
View source: R/mutations_from_vcf.R
Description
A function to extract base substitutions of each position in vcf
Usage
1
mutations_from_vcf(vcf)
Arguments
vcf
A CollapsedVCF object
Value
Character vector with base substitutions
See Also
Examples
1
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## See the 'read_vcfs_as_granges()' example for how we obtained the
## following data:
vcfs <- readRDS(system.file("states/read_vcfs_as_granges_output.rds",
package = "MutationalPatterns"
))
muts <- mutations_from_vcf(vcfs[[1]])
MutationalPatterns documentation built on Nov. 14, 2020, 2:03 a.m.
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Description Usage Arguments Value See Also Examples
View source: R/mutations_from_vcf.R
Description
A function to extract base substitutions of each position in vcf
Usage
1 | mutations_from_vcf(vcf)
|
Arguments
vcf |
A CollapsedVCF object |
Value
Character vector with base substitutions
See Also
Examples
1 2 3 4 5 6 7 | ## See the 'read_vcfs_as_granges()' example for how we obtained the
## following data:
vcfs <- readRDS(system.file("states/read_vcfs_as_granges_output.rds",
package = "MutationalPatterns"
))
muts <- mutations_from_vcf(vcfs[[1]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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