Files in NADfinder

Call wide peaks for sequencing data

NEWS.md README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

data/datalist

data/triplicate.count.rda

data/single.count.rda

R/smoothRatiosByChromosome.R R/callPeaks.R R/tileCount.R R/backgroundCorrection.R R/peakdet.R R/trimPeaks.R R/zscoreOverBck.R R/butterFilter.R R/groupZscores.R R/tileCount2.R R/NADfinder.R R/getCorrelations.R R/triplicates.counts.R R/plotSig.R R/single.count.R R/exportSignals.R R/cumulativePercentage.R R/log2se.R R/transformData.R

vignettes/nature.csl

vignettes/bibliography.bib

vignettes/Picture1.png

vignettes/NADfinder.Rmd man/callPeaks.Rd man/transformData.Rd man/trimPeaks.Rd man/getCorrelations.Rd man/backgroundCorrection.Rd man/zscoreOverBck.Rd man/groupZscores.Rd man/smoothRatiosByChromosome.Rd man/tileCount2.Rd man/triplicate.count.Rd man/peakdet.Rd man/plotSig.Rd man/computeLibSizeChrom.Rd man/exportSignals.Rd man/cumulativePercentage.Rd man/NADfinder-package.Rd man/butterFilter.Rd man/tileCount.Rd man/log2se.Rd man/single.count.Rd man/IntersectionNotStrict.Rd tests/runTests.R tests/testthat/test_smoothRatiosByChromosome.R tests/testthat/test_zscoreOverBck.R tests/testthat/test_log2ratio.R tests/testthat/test_tileCount.R

inst/CITATION

inst/doc/NADfinder.R inst/doc/NADfinder.Rmd

inst/doc/NADfinder.html

inst/extdata/G18.subsampled.srt.bam.bai

inst/extdata/G18.subsampled.srt.bam

inst/extdata/ideo.mm10.rds

inst/extdata/N18.subsampled.srt.bam

inst/extdata/N18.subsampled.srt.bam.bai

NADfinder documentation built on Nov. 8, 2020, 5:35 p.m.