Man pages for NADfinder
Call wide peaks for sequencing data

backgroundCorrectionCorrect ratios for background
butterFilterLow pass filter on ratios by butterworth filter
callPeaksCall peaks using transformed, background corrected, and...
cumulativePercentagePlot the cumulative percentage of tag allocation
exportSignalsOutput signals for visualization
getCorrelationsGet correlation coefficinets and p-values between biological...
groupZscoresCalculate z-scores for each peak
IntersectionNotStrictCount reads overlapping genomic ranges
log2secalculate the log2 transformed ratios for...
NADfinder-packageIdentify nucleolus-associated domains (NADs) from NAD-seq
peakdetDetect peak positions
plotSigPlot signals with ideograms
single.countCounts data for chromosome 18 for an experiment of a single...
smoothRatiosByChromosomeBackgound correction and signal smoothing per chromosome
tileCountPerform overlap queries between reads and genome by windows
tileCount2Perform overlap queries between reads and genome by sliding...
transformDatatransform counts to log2 cpm ratios, log2 ratios or log2 odds...
trimPeaksTrim peaks
triplicate.countCounts data for chromosome 18 for an expriment with...
zscoreOverBckZ-scores over the background
NADfinder documentation built on May 2, 2018, 2:43 a.m.