computeLibSizeChrom: Perform overlap queries between reads and genome by sliding...
In NADfinder: Call wide peaks for sequencing data
Description
Usage
Arguments
Value
Author(s)
View source: R/tileCount2.R
View source: R/tileCount2.R
View source: R/tileCount.R
Description
Perform overlap queries between reads and genome by sliding windows
Count reads over sliding windows.
Usage
1
computeLibSizeChrom(aln_list)
Arguments
aln_list
a list.
Value
A RangedSummarizedExperiment object with chromosome-level depth
The assays slot holds the counts, rowRanges holds the annotation from the
sliding widows of genome.
metadata contains lib.size.chrom for holding chromosome-level sequence depth
Author(s)
Jun Yu,Herv<c3><a9> Pag<c3><a8>s and Julie Zhu
NADfinder documentation built on Nov. 8, 2020, 5:35 p.m.
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Description Usage Arguments Value Author(s)
View source: R/tileCount2.R View source: R/tileCount2.R View source: R/tileCount.R
Description
Perform overlap queries between reads and genome by sliding windows Count reads over sliding windows.
Usage
1 | computeLibSizeChrom(aln_list)
|
Arguments
aln_list |
a list. |
Value
A RangedSummarizedExperiment object with chromosome-level depth The assays slot holds the counts, rowRanges holds the annotation from the sliding widows of genome. metadata contains lib.size.chrom for holding chromosome-level sequence depth
Author(s)
Jun Yu,Herv<c3><a9> Pag<c3><a8>s and Julie Zhu
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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