Man pages for NCIgraph
Pathways from the NCI Pathways Database
| directedBFS | Uses a breadth first search on a directed graph to identify... |
| edgesToMerge | Identifies edges that should be merged to parse a NCI network |
| getNCIPathways | Loads networks from Cytoscape and parses them |
| getSubtype.NCIgraph | Returns a list of @KEGGEdgeSubType objects describing each... |
| is.NCIgraph | Assess whether a graph is a NCI graph |
| mergeNodes | Merges a given list of nodes in a graph |
| NCI.demo.cyList | 10 raw NCI networks from Nature curated pathways and BioCarta... |
| NCIgraph | Class NCIgraph |
| parseNCInetwork | Takes a NCI network and transforms it into a simpler graph... |
| propagateRegulation | Transforms the network in a way that each Biochemical... |
| translateNCI2GeneID | Gives the entrezID corresponding to the nodes of a graph |
