translateNCI2GeneID: Gives the entrezID corresponding to the nodes of a graph

In NCIgraph: Pathways from the NCI Pathways Database

Description

Gives the entrezID corresponding to the nodes of a graph.

Usage

translateNCI2GeneID(g)

Arguments

g	A graph object.

Value

A vector of character giving the entrez ID of the nodes of g.

Author(s)

Laurent Jacob

See Also

parseNCInetwork()

Examples

##------------------------------
## Load NCIgraph
##------------------------------

library(NCIgraph)

## Get some raw networks

data("NCIgraphVignette", package="NCIgraph")

## Parse them

grList <- getNCIPathways(cyList=NCI.demo.cyList, parseNetworks=TRUE, entrezOnly=TRUE, verbose=TRUE)$pList

## Get the gene ids for the first of them

gids <- translateNCI2GeneID(grList[[1]])

NCIgraph documentation built on Nov. 8, 2020, 5:54 p.m.