Pathways from the NCI Pathways Database

directedBFS | Uses a breadth first search on a directed graph to identify... |

edgesToMerge | Identifies edges that should be merged to parse a NCI network |

getNCIPathways | Loads networks from Cytoscape and parses them |

getSubtype.NCIgraph | Returns a list of @KEGGEdgeSubType objects describing each... |

is.NCIgraph | Assess whether a graph is a NCI graph |

mergeNodes | Merges a given list of nodes in a graph |

NCI.demo.cyList | 10 raw NCI networks from Nature curated pathways and BioCarta... |

NCIgraph | Class NCIgraph |

parseNCInetwork | Takes a NCI network and transforms it into a simpler graph... |

propagateRegulation | Transforms the network in a way that each Biochemical... |

translateNCI2GeneID | Gives the entrezID corresponding to the nodes of a graph |

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