getSubtype.NCIgraph: Returns a list of @KEGGEdgeSubType objects describing each...

Description Usage Arguments Value Author(s) Examples

Description

Returns a list of @KEGGEdgeSubType objects describing each edge of the NCI network.

Usage

1

Arguments

object

An NCIgraph object.

Value

A list of KEGGEdgeSubType objects.

Author(s)

Laurent Jacob

Examples

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##------------------------------
## Load NCIgraph
##------------------------------

library(NCIgraph)

##------------------------------
## Get some raw networks
##------------------------------

data("NCIgraphVignette", package="NCIgraph")

##------------------------------
## Parse them
##------------------------------

grList <- getNCIPathways(cyList=NCI.demo.cyList, parseNetworks=TRUE, entrezOnly=TRUE, verbose=TRUE)$pList

##----------------------------------------------------------------
##
## Get the subtype of the second network. Some activation and some
## inhibition edges.
##
##----------------------------------------------------------------

getSubtype.NCIgraph(grList[[2]])


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