getSubtype.NCIgraph: Returns a list of @KEGGEdgeSubType objects describing each...
In NCIgraph: Pathways from the NCI Pathways Database

Description Usage Arguments Value Author(s) Examples

Returns a list of @KEGGEdgeSubType objects describing each edge of the NCI network.

1	getSubtype.NCIgraph(object)

object

An NCIgraph object.

A list of KEGGEdgeSubType objects.

Laurent Jacob

##------------------------------
## Load NCIgraph
##------------------------------

library(NCIgraph)

##------------------------------
## Get some raw networks
##------------------------------

data("NCIgraphVignette", package="NCIgraph")

##------------------------------
## Parse them
##------------------------------

grList <- getNCIPathways(cyList=NCI.demo.cyList, parseNetworks=TRUE, entrezOnly=TRUE, verbose=TRUE)$pList

##----------------------------------------------------------------
##
## Get the subtype of the second network. Some activation and some
## inhibition edges.
##
##----------------------------------------------------------------

getSubtype.NCIgraph(grList[[2]])