NCIgraph: Pathways from the NCI Pathways Database

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("NCIgraph")
AuthorLaurent Jacob
Bioconductor views GraphAndNetwork Pathways
Date of publicationNone
MaintainerLaurent Jacob <laurent.jacob@gmail.com>
LicenseGPL-3
Version1.22.0

View on Bioconductor

Files

.BBSoptions
DESCRIPTION
NAMESPACE
R
R/allClasses.R R/directedBFS.R R/edgesToMerge.R R/getNCIPathways.R R/getSubtype.NCIgraph.R R/is.NCIgraph.R R/mergeNodes.R R/parseNCInetwork.R R/propagateRegulation.R R/translateNCI2GeneID.R
build
build/vignette.rds
data
data/NCIgraphVignette.RData
inst
inst/COPYING
inst/doc
inst/doc/NCIgraph.R
inst/doc/NCIgraph.Rnw
inst/doc/NCIgraph.pdf
inst/extdata
inst/extdata/getNCIPathways.Rex
inst/extdata/getSubtype.NCIgraph.Rex
inst/extdata/parseNCInetwork.Rex
inst/extdata/translateNCI2GeneID.Rex
inst/scripts
inst/scripts/generateManPages.R
man
man/NCI.demo.cyList.Rd man/NCIgraph.Rd man/directedBFS.Rd man/edgesToMerge.Rd man/getNCIPathways.Rd man/getSubtype.NCIgraph.Rd man/is.NCIgraph.Rd man/mergeNodes.Rd man/parseNCInetwork.Rd man/propagateRegulation.Rd man/translateNCI2GeneID.Rd
vignettes
vignettes/NCIgraph-bibli.bib
vignettes/NCIgraph.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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