Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.
|Date of publication||None|
|Maintainer||Laurent Jacob <firstname.lastname@example.org>|
directedBFS: Uses a breadth first search on a directed graph to identify...
edgesToMerge: Identifies edges that should be merged to parse a NCI network
getNCIPathways: Loads networks from Cytoscape and parses them
getSubtype.NCIgraph: Returns a list of @KEGGEdgeSubType objects describing each...
is.NCIgraph: Assess whether a graph is a NCI graph
mergeNodes: Merges a given list of nodes in a graph
NCI.demo.cyList: 10 raw NCI networks from Nature curated pathways and BioCarta...
NCIgraph: Class NCIgraph
parseNCInetwork: Takes a NCI network and transforms it into a simpler graph...
propagateRegulation: Transforms the network in a way that each Biochemical...
translateNCI2GeneID: Gives the entrezID corresponding to the nodes of a graph