Description Usage Arguments Value
Create interaction network for top n enriched GO term:coding RNA or GO-term:noncoding RNA interaction. Nodes are GO term and RNA, edges are interactions between them. Each GO-term is annotated and enriched with the mRNAs provided from the input list.
1 2 3 4 5 6 7 | createNetwork(
mrnaObject,
type = "pvalue",
n,
isNonCode = FALSE,
takeID = FALSE
)
|
mrnaObject |
Output of enrichment results |
type |
Sort in terms of p-values or FDR. Possible values "pvalue", "padjust" |
n |
Number of top enrichments |
isNonCode |
Boolean value that checks whether node of the network is GO-term\& coding or GO-term\& noncoding genes. By default, it is FALSE so node of the network is GO-term\& coding gene. Otherwise, nodes are GO-term\& noncoding genes. |
takeID |
Boolean value that checks the name decision of the GO/pathway node, GO-term/pathway-term or GO ID-pathway ID. If it is true, name of the GO/pathway node will be GO ID/pathway ID will be used, otherwise, name of the GO/pathway node is GO-term. By default, it is FALSE. It is suggested to used when the GO-term is two long or the GO-term is missing for the custom enrichment database. |
Network
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