extractBiotype: Get the biotype of the non-coding genes. It is suitable for...
In NoRCE: NoRCE: Noncoding RNA Sets Cis Annotation and Enrichment
Description
Usage
Arguments
Value
Examples
View source: R/biotypeOperations.R
Description
Get the biotype of the non-coding genes. It is suitable for the
GENCODE gtf files
Usage
1
extractBiotype(gtfFile)
Arguments
gtfFile
Path of the input gtf file which contains biotype
information. The gtf file must be provided from the Ensembl
or Gencode site. For space efficiency, gft files should be
in a zip format.
Value
Tabular form of the gtf file with the required features
such as gene id and biotypes
Examples
1
2
fileImport<-system.file("extdata", "temp.gtf", package = "NoRCE")
gtf <- extractBiotype(gtfFile = fileImport)
NoRCE documentation built on Nov. 8, 2020, 7:17 p.m.
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Description Usage Arguments Value Examples
View source: R/biotypeOperations.R
Description
Get the biotype of the non-coding genes. It is suitable for the GENCODE gtf files
Usage
1 | extractBiotype(gtfFile)
|
Arguments
gtfFile |
Path of the input gtf file which contains biotype information. The gtf file must be provided from the Ensembl or Gencode site. For space efficiency, gft files should be in a zip format. |
Value
Tabular form of the gtf file with the required features such as gene id and biotypes
Examples
1 2 | fileImport<-system.file("extdata", "temp.gtf", package = "NoRCE")
gtf <- extractBiotype(gtfFile = fileImport)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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