extractBiotype: Get the biotype of the non-coding genes. It is suitable for...

Description Usage Arguments Value Examples

View source: R/biotypeOperations.R

Description

Get the biotype of the non-coding genes. It is suitable for the GENCODE gtf files

Usage

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extractBiotype(gtfFile)

Arguments

gtfFile

Path of the input gtf file which contains biotype information. The gtf file must be provided from the Ensembl or Gencode site. For space efficiency, gft files should be in a zip format.

Value

Tabular form of the gtf file with the required features such as gene id and biotypes

Examples

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fileImport<-system.file("extdata", "temp.gtf", package = "NoRCE")
gtf <- extractBiotype(gtfFile = fileImport)

NoRCE documentation built on Nov. 8, 2020, 7:17 p.m.