Description Usage Arguments Value Examples
Write the tabular form of the pathway or GO term enrichment results
1 | writeEnrichment(mrnaObject, fileName, sept = "\t", type = "pAdjust", n)
|
mrnaObject |
Object of the enrichment result |
fileName |
File name of the txt file |
sept |
File separator, by default, it is tab('\t') |
type |
Draw the dot plot according to the p-value or adjusted p-value ("pvalue", "pAdjust"). Default value is "pAdjust". |
n |
Number of GO terms or pathways, that ordered by type and has least number of top p-value |
Text file of the enrichment results in a tabular format
1 2 3 4 | ncGO<-geneGOEnricher(gene = brain_disorder_ncRNA, org_assembly='hg19',
near=TRUE, genetype = 'Ensembl_gene')
writeEnrichment(mrnaObject = ncGO,fileName = "a.txt",sept = '\t')
|
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