normMethods: Perform normalizations on Normalyzer dataset

Description Usage Arguments Value Examples

View source: R/normMethods.R

Description

Perform normalizations on Normalyzer dataset

Usage

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normMethods(nds, forceAll = FALSE, normalizeRetentionTime = TRUE,
  quiet = FALSE, rtStepSizeMinutes = 1, rtWindowMinCount = 100,
  rtWindowShifts = 1, rtWindowMergeMethod = "mean",
  noLogTransform = FALSE)

Arguments

nds

Normalyzer dataset object.

forceAll

Force all methods to run despite not qualifying for thresholds.

normalizeRetentionTime

Perform retention time based normalization methods.

quiet

Prevent diagnostic output

rtStepSizeMinutes

Retention time normalization window size.

rtWindowMinCount

Minimum number of datapoints in each retention-time segment.

rtWindowShifts

Number of layered retention time normalized windows.

rtWindowMergeMethod

Merge approach for layered retention time windows.

noLogTransform

Per default NormalyzerDE performs a log-transformation on the input data. If not needed, specify this option

Value

Returns Normalyzer results object with performed analyzes assigned as attributes

Examples

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NormalyzerDE documentation built on Nov. 8, 2020, 8:22 p.m.