generateAnnotatedMatrix: Generate an annotated data frame from statistics object
In NormalyzerDE: Evaluation of normalization methods and calculation of differential expression analysis statistics
Description
Usage
Arguments
Value
Examples
View source: R/calculateStatistics.R
Description
Extracts key values (p-value, adjusted p-value, log2-fold change and
average expression values) from an NormalyzerStatistics instance
and appends these to the annotation- and data-matrices
Usage
1
Arguments
nst
NormalyzerDE statistics object.
Value
outDf Annotated statistics matrix
Examples
1
2
3
4
data(example_stat_summarized_experiment)
statObj <- NormalyzerStatistics(example_stat_summarized_experiment)
statObj <- calculateContrasts(statObj, comparisons=c("1-2", "2-3"), condCol="group", type="limma")
annotDf <- generateAnnotatedMatrix(statObj)
NormalyzerDE documentation built on Nov. 8, 2020, 8:22 p.m.
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Description Usage Arguments Value Examples
View source: R/calculateStatistics.R
Description
Extracts key values (p-value, adjusted p-value, log2-fold change and average expression values) from an NormalyzerStatistics instance and appends these to the annotation- and data-matrices
Usage
1 |
Arguments
nst |
NormalyzerDE statistics object. |
Value
outDf Annotated statistics matrix
Examples
1 2 3 4 | data(example_stat_summarized_experiment)
statObj <- NormalyzerStatistics(example_stat_summarized_experiment)
statObj <- calculateContrasts(statObj, comparisons=c("1-2", "2-3"), condCol="group", type="limma")
annotDf <- generateAnnotatedMatrix(statObj)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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