R/RcppExports.R

In OncoSimulR: Forward Genetic Simulation of Cancer Progression with Epistasis

# This file was generated by Rcpp::compileAttributes
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393

nr_BNB_Algo5 <- function(rFE, mu_, death, initSize, sampleEvery, detectionSize, finalTime, initSp, initIt, seed, verbosity, speciesFS, ratioForce, typeFitness_, maxram, mutationPropGrowth, initMutant_, maxWallTime, keepEvery, K, detectionDrivers, onlyCancer, errorHitWallTime, maxNumTries, errorHitMaxTries, minDetectDrvCloneSz, extraTime, keepPhylog, MMUEF, full2mutator_, n2, p2, PDBaseline, cPDetect_i, checkSizePEvery, AND_DrvProbExit, fixation_list) {
    .Call('OncoSimulR_nr_BNB_Algo5', PACKAGE = 'OncoSimulR', rFE, mu_, death, initSize, sampleEvery, detectionSize, finalTime, initSp, initIt, seed, verbosity, speciesFS, ratioForce, typeFitness_, maxram, mutationPropGrowth, initMutant_, maxWallTime, keepEvery, K, detectionDrivers, onlyCancer, errorHitWallTime, maxNumTries, errorHitMaxTries, minDetectDrvCloneSz, extraTime, keepPhylog, MMUEF, full2mutator_, n2, p2, PDBaseline, cPDetect_i, checkSizePEvery, AND_DrvProbExit, fixation_list)
}

BNB_Algo5 <- function(restrictTable, numDrivers, numGenes, typeCBN_, s, death, mu, initSize, sampleEvery, detectionSize, finalTime, initSp, initIt, seed, verbosity, speciesFS, ratioForce, typeFitness_, maxram, mutationPropGrowth, initMutant, maxWallTime, keepEvery, sh, K, detectionDrivers, onlyCancer, errorHitWallTime, maxNumTries, errorHitMaxTries, minDetectDrvCloneSz, extraTime) {
    .Call('OncoSimulR_BNB_Algo5', PACKAGE = 'OncoSimulR', restrictTable, numDrivers, numGenes, typeCBN_, s, death, mu, initSize, sampleEvery, detectionSize, finalTime, initSp, initIt, seed, verbosity, speciesFS, ratioForce, typeFitness_, maxram, mutationPropGrowth, initMutant, maxWallTime, keepEvery, sh, K, detectionDrivers, onlyCancer, errorHitWallTime, maxNumTries, errorHitMaxTries, minDetectDrvCloneSz, extraTime)
}

evalRGenotype <- function(rG, rFE, verbose, prodNeg, calledBy_) {
    .Call('OncoSimulR_evalRGenotype', PACKAGE = 'OncoSimulR', rG, rFE, verbose, prodNeg, calledBy_)
}

evalRGenotypeAndMut <- function(rG, rFE, muEF, full2mutator_, verbose, prodNeg) {
    .Call('OncoSimulR_evalRGenotypeAndMut', PACKAGE = 'OncoSimulR', rG, rFE, muEF, full2mutator_, verbose, prodNeg)
}

accessibleGenotypes <- function(y, f, numMut, th) {
    .Call('OncoSimulR_accessibleGenotypes', PACKAGE = 'OncoSimulR', y, f, numMut, th)
}


genot2AdjMat <- function(y, f, numMut) {
    .Call('OncoSimulR_genot2AdjMat', PACKAGE = 'OncoSimulR', y, f, numMut)
}

peaksLandscape <- function(y, f, numMut, th) {
    .Call('OncoSimulR_peaksLandscape', PACKAGE = 'OncoSimulR', y, f, numMut, th)
}

accessibleGenotypes_former <- function(y, f, numMut, th) {
    .Call('OncoSimulR_accessibleGenotypes_former', PACKAGE = 'OncoSimulR', y, f, numMut, th)
}

## readFitnessEffects <- function(rFE, echo) {
##     invisible(.Call('OncoSimulR_readFitnessEffects', PACKAGE = 'OncoSimulR', rFE, echo))
## }